we check SNV / InDel variants of 170 genes, 25 fusion genes (are listed) and a promoter abnormality (TERT).

SNV / InDel (170 genes):

ABL1, ABL2, AKT1, AKT2, AKT3, ALK, APC, AR, ARAF, ASXL1, ATM, ATR, AURKA, AURKB, AURKC, AXL, BAP1, BCL2, BRAF, BRCA1, BRCA2, BRD2, BRD3, BRD4, CBFB, CCND1, CCND2, CCND3, CCNE1, CDH1, CDK12, CDK4, CDK6, CDKN1A, CDKN1B, CDKN2A, CDKN2B, CDKN2C, CEBPA, CHEK2, CREBBP, CRKL, CSF1R, CTNNB1, DDR1, DDR2, DNMT3A, DOT1L, EGFR, EPHA3, ERBB2, ERBB3, ERBB4, ERCC2, ERG, ERRFI1, ESR1, ETV1, ETV4, ETV5, ETV6, EWSR1, EZH2, FBXW7, FGFR1, FGFR2, FGFR3, FGFR4, FLCN, FLT1, FLT3, FLT4, FOXL2, GNA11, GNAQ, GNAS, HDAC9, HGF, HRAS, IDH1, IDH2, IGF1R, IGF2, JAK1, JAK2, JAK3, KDR, KIT, KMT2A, KRAS, MAP2K1, MAP2K2, MAP2K4, MAP3K1, MAP3K4, MAPK1, MAPK3, MAPK8, MCL1, MDM2, MDM4, MED12, MEN1, MET, MITF, MLH1, MPL, MSH2, MSH6, MTOR, MYC, MYCN, MYD88, NF1, NF2, NFKBIA, NKX2-1, NOTCH1, NOTCH2, NOTCH3, NOTCH4, NPM1, NRAS, NTRK1, NTRK2, NTRK3, NUTM1, PDGFB, PDGFRA, PDGFRB, PIK3CA, PIK3CB, PIK3CD, PIK3R1, PIK3R2, POLE, PPARG, PTCH1, PTEN, RAB35, RAD50, RAF1, RARA, RB1, RET, RHEB, RICTOR, RNF43, ROS1, RSPO1, RSPO2, RUNX1, SMAD2, SMAD4, SMARCA4, SMARCB1, SMO, SRC, STK11, SYK, TET2, TMPRSS2, TOP2A, TP53, TSC1, TSC2, VHL, WT1, XPO1, ZNRF3

Fusion (25 genes)

ABL1, AKT3, ALK, BCL2, BRAF, EGFR, ERG, ETV1, EWSR1, FGFR1, FGFR2, FGFR3, JAK2, KMT2A, MYC, NPM1, NTRK1, PDGFRA, PDGFRB, PPARG, RAF1, RARA, RET, ROS1,TMPRSS2

we check SNV / InDel variants of 546 genes, 48 fusion genes (are listed) and a promoter abnormality (TERT).

SNV / InDel (546 genes):

ABL1, ABL2, ABRAXAS1, ACVR1, ACVR1B, ADGRA2, AGO2, AHNAK2, AKT1, AKT2, AKT3, ALK, ALOX12B, AMER1, ANKRD11, APC, AR, ARAF, ARFRP1, ARID1A, ARID1B, ARID2, ARID5B, ASXL1, ASXL2, ATM, ATR, ATRX, AURKA, AURKB, AURKC, AXIN1, AXIN2, AXL, B2M, BABAM1, BAP1, BARD1, BBC3, BCL10, BCL2, BCL2L1, BCL2L11, BCL2L2, BCL6, BCOR, BCORL1, BCR, BIRC3, BLM, BMPR1A, BRAF, BRCA1, BRCA2, BRD2, BRD3, BRD4, BRIP1, BTG1, BTK, CALR, CARD11, CARM1, CASP8, CBFB, CBL, CCND1, CCND2, CCND3, CCNE1, CCNQ, CD274, CD276, CD79A, CD79B, CDC42, CDC73, CDH1, CDK12, CDK4, CDK6, CDK8, CDKN1A, CDKN1B, CDKN2A, CDKN2B, CDKN2C, CEBPA, CENPA, CHD2, CHD4, CHEK1, CHEK2, CIC, COP1, CREBBP, CRKL, CRLF2, CSDE1, CSF1R, CSF3R, CTCF, CTLA4, CTNNA1, CTNNB1, CUL3, CXCR4, CYLD, CYSLTR2, DAXX, DCUN1D1, DDR1, DDR2, DICER1, DIS3, DNAJB1, DNMT1, DNMT3A, DNMT3B, DOT1L, DROSHA, DUSP4, E2F3, EED, EGFL7, EGFR, EIF1AX, EIF4A2, EIF4E, ELF3, ELOC, EMSY, EP300, EPAS1, EPCAM, EPHA3, EPHA5, EPHA7, EPHB1, ERBB2, ERBB3, ERBB4, ERCC2, ERCC3, ERCC4, ERCC5, ERF, ERG, ERRFI1, ESR1,ETV1, ETV4, ETV5, ETV6, EWSR1, EZH1, EZH2, FAM46C, FANCA, FANCC, FANCD2, FANCE, FANCF, FANCG, FANCL, FAS, FAT1, FBXW7, FGF10, FGF14, FGF19, FGF23, FGF3, FGF4, FGF6, FGFR1, FGFR2, FGFR3, FGFR4, FH, FLCN, FLT1, FLT3, FLT4, FOXA1, FOXL2, FOXO1, FOXP1, FRS2, FUBP1, FYN, GABRA6, GATA1, GATA2, GATA3, GATA4, GATA6, GID4, GLI1, GNA11, GNA13, GNAQ, GNAS, GPS2, GREM1, GRIN2A, GRM3, GSK3B, H3F3A, H3F3B, H3F3C, HDAC9, HGF, HIST1H1C, HIST1H2BD, HIST1H3A, HIST1H3B, HIST1H3C, HIST1H3D, HIST1H3E, HIST1H3F, HIST1H3G, HIST1H3H, HIST1H3I, HIST1H3J, HIST2H3A, HIST2H3C, HIST2H3D, HIST3H3, HLA-A, HLAB, HNF1A, HOXB13, HRAS, HSD3B1, HSP90AA1, ICOSLG, ID3, IDH1, IDH2, IFNGR1, IGF1, IGF1R, IGF2, IKBKE, IKZF1, IL10, IL7R, INHA, INHBA, INPP4A, INPP4B, INPPL1, INSR, IRF2, IRF4, IRS1, IRS2, JAK1, JAK2, JAK3, JUN, KAT6A, KDM5A, KDM5C, KDM6A, KDR, KEAP1, KEL, KIT, KLF4, KLHL6, KMT2A, KMT2B, KMT2C, KMT2D, KMT5A, KNSTRN, KRAS, LATS1, LATS2, LMO1, LRP1B, LYN, LZTR1, MAGI2, MALT1, MAP2K1, MAP2K2, MAP2K4, MAP3K1, MAP3K13, MAP3K14, MAP3K4, MAPK1, MAPK3, MAPK8, MAPKAP1, MAX, MCL1, MDC1, MDM2, MDM4, MED12, MEF2B, MEN1, MET, MGA, MITF, MLH1, MPL, MRE11, MSH2, MSH3, MSH6, MSI1, MSI2, MST1, MST1R, MTOR, MUTYH, MYB, MYC, MYCL, MYCN, MYD88, MYOD1, NBN, NCOA3, NCOR1, NEGR1, NF1, NF2, NFE2L2, NFKBIA, NKX2-1, NKX3-1, NOTCH1, NOTCH2, NOTCH3, NOTCH4, NPM1, NRAS,NSD1, NSD2, NSD3, NTHL1, NTRK1, NTRK2,NTRK3, NUF2, NUP93, NUTM1, PACRG, PAK1, PAK3, PAK5, PAK6, PALB2, PARP1, PAX5, PAX8, PBRM1, PDCD1, PDCD1LG2, PDGFB, PDGFRA, PDGFRB, PDK1, PDPK1, PGR, PHOX2B, PIK3C2B, PIK3C2G, PIK3C3, PIK3CA, PIK3CB, PIK3CD, PIK3CG, PIK3R1, PIK3R2, PIK3R3, PIM1, PLCG2, PLK2, PMAIP1, PMS1, PMS2, PNRC1, POLD1, POLE, PPARG, PPM1D, PPP2R1A, PPP4R2, PPP6C, PRDM1, PRDM14, PREX2, PRKAR1A, PRKCI, PRKD1, PRKDC, PRSS1, PRSS8, PTCH1, PTEN, PTP4A1, PTPN11, PTPRD, PTPRS, PTPRT, QKI, RAB35, RAC1, RAC2, RAD21, RAD50, RAD51, RAD51B, RAD51C, RAD51D, RAD52, RAD54L, RAF1, RANBP2, RARA, RASA1, RB1, RBM10, RECQL, RECQL4, REL, RET, RHEB, RHOA, RICTOR, RIT1, RNF43, ROS1, RPS6KA4, RPS6KB2, RPTOR, RRAGC, RRAS, RRAS2, RSPO1, RSPO2, RTEL1, RUNX1, RUNX1T1, RXRA, RYBP, SDHA, SDHAF2, SDHB, SDHC, SDHD, SESN1, SESN2, SESN3, SETD2, SF3B1, SH2B3, SH2D1A, SHOC2, SHQ1, SLIT2, SLX4, SMAD2, SMAD3, SMAD4, SMARCA4, SMARCB1, SMARCD1, SMO, SMYD3, SNCAIP, SOCS1, SOS1, SOX10, SOX17, SOX2, SOX9, SPEN, SPOP, SPRED1, SPTA1, SRC, SRSF2, STAG2, STAT3, STAT4, STAT5A, STAT5B, STK11, STK19, STK40, SUFU, SUZ12, SYK, TAF1, TAP1, TAP2, TBX3, TCF3, TCF7L2, TEK, TERT, TET1, TET2, TGFBR1, TGFBR2, TMEM127, TMPRSS2, TNFAIP3, TNFRSF14, TOP1, TOP2A, TP53, TP53BP1, TP63, TRAF2, TRAF7, TSC1, TSC2, TSHR, U2AF1, UPF1, VEGFA, VHL, VTCN1, WISP3, WT1, WWTR1, XIAP, XPO1, XRCC2, YAP1, YES1, ZBTB2, ZFHX3, ZNF217, ZNF703, ZNRF3, ZRSR2

Fusion (48 genes)

ABL1, AKT3, ALK, AXL, BCL2, BCL6, BRAF, CCND1, CIITA, CREB3L2, EGFR, EML4, ERG, ETV1, ETV6, EWSR1, FGFR1, FGFR2, FGFR3, FUS, HIC1, JAK2, KMT2A, KRAS, MAGI3, MBIP, MET, MYC, NPM1,NRG1, NTRK1, NTRK2, NTRK3, PAX5, PAX8, PDGFRA, PDGFRB, PPARG, RAF1, RARA, RET, ROS1, SLC45A3, SS18, TMPRSS2, TRA, TRB, TRG